Biomathhh

Welcome to Biomathhh

Biomathhh is a Python package that provides simple, well tested functions for common biological calculations. Below you will find a quick start on how to use the package functions.

Installation

pip install git+https://github.com/UBC-MDS/DSCI_524_group27_biomathhh.git

Quick Start

Here are examples of how to use each function:

Calculate Dilution

Computes the final concentration of a solution after dilution using the standard laboratory equation

from biomathhh.dilution import calculate_dilution

final_conc = calculate_dilution(
    stock_concentration=5.0,
    stock_volume=1.0,
    final_volume=5.0
)
print(final_conc)

Output:
1.0

Exponential Growth

Calculates how a quantity grows or decays over time assuming continuous exponential change.

from biomathhh.exponential_growth import exponential_growth

value = exponential_growth(100, 0.05, 10)
print(round(value, 6))

Output:
164.872127

pH Calculation

Calculate pH scale for a given hydronium concentration

from biomathhh.pH_scale import calculate_pH

hydronium_concentration = 1e-4
ph_value = calculate_pH(hydronium_concentration)

print(ph_value)

Output:
4.0

Shannon-Wiener Diversity Index

The Shannon Wiener index quantifies species diversity by accounting for both species richness and evenness.

from biomathhh.sw_diversity_index import sw_diversity_index

species_counts = [50, 30, 20]
diversity_index = sw_diversity_index(species_counts)

print(diversity_index)

Output:
1.0297